HL_5JCS_021

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGGUGGCCAUGGAAGUCGGAAUCCG

Length

25 nucleotides

Bulged bases

5JCS|1|x|G|1236, 5JCS|1|x|U|1241, 5JCS|1|x|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|C|1232
5JCS|1|x|G|1233
5JCS|1|x|G|1234
5JCS|1|x|U|1235
5JCS|1|x|G|1236
5JCS|1|x|G|1237
5JCS|1|x|C|1238
5JCS|1|x|C|1239
5JCS|1|x|A|1240
5JCS|1|x|U|1241
5JCS|1|x|G|1242
5JCS|1|x|G|1243
5JCS|1|x|A|1244
5JCS|1|x|A|1245
5JCS|1|x|G|1246
5JCS|1|x|U|1247
5JCS|1|x|C|1248
5JCS|1|x|G|1249
5JCS|1|x|G|1250
5JCS|1|x|A|1251
5JCS|1|x|A|1252
5JCS|1|x|U|1253
5JCS|1|x|C|1254
5JCS|1|x|C|1255
5JCS|1|x|G|1256

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L12-A

Chain n

Ribosome assembly factor MRT4

Chain o

Nucleolar GTP-binding protein 1

Chain q

Ribosome assembly protein 4