HL_5JCS_022

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

5JCS|1|x|A|1270, 5JCS|1|x|A|1271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|U|1267
5JCS|1|x|G|1268
5JCS|1|x|U|1269
5JCS|1|x|A|1270
5JCS|1|x|A|1271
5JCS|1|x|C|1272
5JCS|1|x|A|1273
5JCS|1|x|A|1274

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L12-A

Chain n

Ribosome assembly factor MRT4

Chain o

Nucleolar GTP-binding protein 1