HL_5JCS_025

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AAUGAGAACUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_025 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2459

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5JCS|1|x|A|1461
5JCS|1|x|A|1462
5JCS|1|x|U|1463
5JCS|1|x|G|1464
5JCS|1|x|A|1465
5JCS|1|x|G|1466
5JCS|1|x|A|1467
5JCS|1|x|A|1468
5JCS|1|x|C|1469
5JCS|1|x|U|1470
5JCS|1|x|U|1471

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A