HL_5JCS_028

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGAUUUUAUGCAG

Length

13 nucleotides

Bulged bases

5JCS|1|x|U|1568, 5JCS|1|x|U|1569, 5JCS|1|x|A|1571

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|U|1564
5JCS|1|x|G|1565
5JCS|1|x|A|1566
5JCS|1|x|U|1567
5JCS|1|x|U|1568
5JCS|1|x|U|1569
5JCS|1|x|U|1570
5JCS|1|x|A|1571
5JCS|1|x|U|1572
5JCS|1|x|G|1573
5JCS|1|x|C|1574
5JCS|1|x|A|1575
5JCS|1|x|G|1576

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain X

60S ribosomal protein L25

Chain y

5.8S ribosomal RNA; 5.8S rRNA