HL_5JCS_032
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GUGAACAGC
- Length
- 9 nucleotides
- Bulged bases
- 5JCS|1|x|C|1866
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JCS_032 not in the Motif Atlas
- Geometric match to HL_5J7L_012
- Geometric discrepancy: 0.2846
- The information below is about HL_5J7L_012
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
5JCS|1|x|G|1861
5JCS|1|x|U|1862
5JCS|1|x|G|1863
5JCS|1|x|A|1864
5JCS|1|x|A|1865
5JCS|1|x|C|1866
5JCS|1|x|A|1867
5JCS|1|x|G|1868
5JCS|1|x|C|1869
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
Coloring options: