HL_5JCS_048

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAUUGUUCACC

Length

11 nucleotides

Bulged bases

5JCS|1|x|G|2922

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_048 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1604

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

5JCS|1|x|G|2918
5JCS|1|x|A|2919
5JCS|1|x|U|2920
5JCS|1|x|U|2921
5JCS|1|x|G|2922
5JCS|1|x|U|2923
5JCS|1|x|U|2924
5JCS|1|x|C|2925
5JCS|1|x|A|2926
5JCS|1|x|C|2927
5JCS|1|x|C|2928

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain V

60S ribosomal protein L23-A

Chain o

Nucleolar GTP-binding protein 1