HL_5JCS_052

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAUUAUGGCUGAACGCCUCUAAGUCAGAAUCC

Length

32 nucleotides

Bulged bases

5JCS|1|x|G|3116, 5JCS|1|x|C|3120, 5JCS|1|x|A|3130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|G|3102
5JCS|1|x|A|3103
5JCS|1|x|U|3104
5JCS|1|x|U|3105
5JCS|1|x|A|3106
5JCS|1|x|U|3107
5JCS|1|x|G|3108
5JCS|1|x|G|3109
5JCS|1|x|C|3110
5JCS|1|x|U|3111
5JCS|1|x|G|3112
5JCS|1|x|A|3113
5JCS|1|x|A|3114
5JCS|1|x|C|3115
5JCS|1|x|G|3116
5JCS|1|x|C|3117
5JCS|1|x|C|3118
5JCS|1|x|U|3119
5JCS|1|x|C|3120
5JCS|1|x|U|3121
5JCS|1|x|A|3122
5JCS|1|x|A|3123
5JCS|1|x|G|3124
5JCS|1|x|U|3125
5JCS|1|x|C|3126
5JCS|1|x|A|3127
5JCS|1|x|G|3128
5JCS|1|x|A|3129
5JCS|1|x|A|3130
5JCS|1|x|U|3131
5JCS|1|x|C|3132
5JCS|1|x|C|3133

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain O

60S ribosomal protein L16-A