HL_5JCS_054

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

5JCS|1|x|A|3243, 5JCS|1|x|A|3244

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_054 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3792

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5JCS|1|x|C|3240
5JCS|1|x|G|3241
5JCS|1|x|G|3242
5JCS|1|x|A|3243
5JCS|1|x|A|3244
5JCS|1|x|A|3245
5JCS|1|x|G|3246
5JCS|1|x|G|3247

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A