HL_5JCS_055

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAGUAGAGUAGCCUUGUUGUUACGAUCUG

Length

29 nucleotides

Bulged bases

5JCS|1|x|U|3341, 5JCS|1|x|U|3351, 5JCS|1|x|U|3352, 5JCS|1|x|U|3354, 5JCS|1|x|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|C|3338
5JCS|1|x|A|3339
5JCS|1|x|G|3340
5JCS|1|x|U|3341
5JCS|1|x|A|3342
5JCS|1|x|G|3343
5JCS|1|x|A|3344
5JCS|1|x|G|3345
5JCS|1|x|U|3346
5JCS|1|x|A|3347
5JCS|1|x|G|3348
5JCS|1|x|C|3349
5JCS|1|x|C|3350
5JCS|1|x|U|3351
5JCS|1|x|U|3352
5JCS|1|x|G|3353
5JCS|1|x|U|3354
5JCS|1|x|U|3355
5JCS|1|x|G|3356
5JCS|1|x|U|3357
5JCS|1|x|U|3358
5JCS|1|x|A|3359
5JCS|1|x|C|3360
5JCS|1|x|G|3361
5JCS|1|x|A|3362
5JCS|1|x|U|3363
5JCS|1|x|C|3364
5JCS|1|x|U|3365
5JCS|1|x|G|3366

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L22-A

Chain t

Ribosome biogenesis protein RLP24