HL_5JCS_057
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5JCS|1|y|C|84, 5JCS|1|y|U|86
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JCS_057 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.5723
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5JCS|1|y|U|69
5JCS|1|y|G|70
5JCS|1|y|A|71
5JCS|1|y|A|72
5JCS|1|y|U|73
5JCS|1|y|U|74
5JCS|1|y|G|75
5JCS|1|y|C|76
5JCS|1|y|A|77
5JCS|1|y|G|78
5JCS|1|y|A|79
5JCS|1|y|A|80
5JCS|1|y|U|81
5JCS|1|y|U|82
5JCS|1|y|C|83
5JCS|1|y|C|84
5JCS|1|y|G|85
5JCS|1|y|U|86
5JCS|1|y|G|87
5JCS|1|y|A|88
5JCS|1|y|A|89
Current chains
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain u
- Probable metalloprotease ARX1
- Chain x
- Large subunit ribosomal RNA; LSU rRNA
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