HL_5JCS_064

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGAAUGUAGCUUGCCUCGGUAAGUAUUAUAGCC

Length

33 nucleotides

Bulged bases

5JCS|1|x|U|534, 5JCS|1|x|C|544, 5JCS|1|x|C|546, 5JCS|1|x|G|547, 5JCS|1|x|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|G|530
5JCS|1|x|G|531
5JCS|1|x|A|532
5JCS|1|x|A|533
5JCS|1|x|U|534
5JCS|1|x|G|535
5JCS|1|x|U|536
5JCS|1|x|A|537
5JCS|1|x|G|538
5JCS|1|x|C|539
5JCS|1|x|U|540
5JCS|1|x|U|541
5JCS|1|x|G|542
5JCS|1|x|C|543
5JCS|1|x|C|544
5JCS|1|x|U|545
5JCS|1|x|C|546
5JCS|1|x|G|547
5JCS|1|x|G|548
5JCS|1|x|U|549
5JCS|1|x|A|550
5JCS|1|x|A|551
5JCS|1|x|G|552
5JCS|1|x|U|553
5JCS|1|x|A|554
5JCS|1|x|U|555
5JCS|1|x|U|556
5JCS|1|x|A|557
5JCS|1|x|U|558
5JCS|1|x|A|559
5JCS|1|x|G|560
5JCS|1|x|C|561
5JCS|1|x|C|562

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain M

60S ribosomal protein L14-A

Chain S

60S ribosomal protein L20-A