HL_5JCS_070

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCAGGGUUGAUAUGAUGCCCUGA

Length

23 nucleotides

Bulged bases

5JCS|1|x|U|1351, 5JCS|1|x|A|1352, 5JCS|1|x|U|1353, 5JCS|1|x|G|1354, 5JCS|1|x|U|1356

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|U|1341
5JCS|1|x|C|1342
5JCS|1|x|A|1343
5JCS|1|x|G|1344
5JCS|1|x|G|1345
5JCS|1|x|G|1346
5JCS|1|x|U|1347
5JCS|1|x|U|1348
5JCS|1|x|G|1349
5JCS|1|x|A|1350
5JCS|1|x|U|1351
5JCS|1|x|A|1352
5JCS|1|x|U|1353
5JCS|1|x|G|1354
5JCS|1|x|A|1355
5JCS|1|x|U|1356
5JCS|1|x|G|1357
5JCS|1|x|C|1358
5JCS|1|x|C|1359
5JCS|1|x|C|1360
5JCS|1|x|U|1361
5JCS|1|x|G|1362
5JCS|1|x|A|1363

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain E

60S ribosomal protein L6-A

Chain F

60S ribosomal protein L7-A

Chain Q

60S ribosomal protein L18-A