HL_5JCS_075

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AUGAAAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JCS_075 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3519

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5JCS|1|x|A|2743
5JCS|1|x|U|2744
5JCS|1|x|G|2745
5JCS|1|x|A|2746
5JCS|1|x|A|2747
5JCS|1|x|A|2748
5JCS|1|x|G|2749
5JCS|1|x|U|2750

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain z

5S ribosomal RNA; 5S rRNA