HL_5JCS_077

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUUUUGCGGCUGUCUGAUCAGGCAUUGCCGCGAAG

Length

35 nucleotides

Bulged bases

5JCS|1|x|U|3056, 5JCS|1|x|U|3057, 5JCS|1|x|U|3058, 5JCS|1|x|U|3078, 5JCS|1|x|U|3079

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|U|3054
5JCS|1|x|U|3055
5JCS|1|x|U|3056
5JCS|1|x|U|3057
5JCS|1|x|U|3058
5JCS|1|x|G|3059
5JCS|1|x|C|3060
5JCS|1|x|G|3061
5JCS|1|x|G|3062
5JCS|1|x|C|3063
5JCS|1|x|U|3064
5JCS|1|x|G|3065
5JCS|1|x|U|3066
5JCS|1|x|C|3067
5JCS|1|x|U|3068
5JCS|1|x|G|3069
5JCS|1|x|A|3070
5JCS|1|x|U|3071
5JCS|1|x|C|3072
5JCS|1|x|A|3073
5JCS|1|x|G|3074
5JCS|1|x|G|3075
5JCS|1|x|C|3076
5JCS|1|x|A|3077
5JCS|1|x|U|3078
5JCS|1|x|U|3079
5JCS|1|x|G|3080
5JCS|1|x|C|3081
5JCS|1|x|C|3082
5JCS|1|x|G|3083
5JCS|1|x|C|3084
5JCS|1|x|G|3085
5JCS|1|x|A|3086
5JCS|1|x|A|3087
5JCS|1|x|G|3088

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A

Chain t

Ribosome biogenesis protein RLP24