HL_5JEA_001

3D structure

PDB id

5JEA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CCCGAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10540.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5JEA|1|R|C|-39
5JEA|1|R|C|-38
5JEA|1|R|C|-37
5JEA|1|R|G|-36
5JEA|1|R|A|-35
5JEA|1|R|A|-34
5JEA|1|R|G|-33
5JEA|1|R|G|-32

Current chains

Chain R

RNA (29-MER)

Nearby chains

Chain G

Exosome complex component RRP40

Chain H

Exosome complex component RRP4