Motif HL_10540.1 Version HL_10540.1 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-6 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5JEA_001 | 5JEA | 0.0000 | 1 | R | RNA (29-MER) | C | -38 | C | -37 | G | -36 | A | -35 | A | -34 | G | -33 | G | -32 | ncWW | ||
| 2 | HL_5Y58_001 | 5Y58 | 0.9421 | 2 | X | TLC1 | U | 297 | G | 298 | G | 299 | U | 301 | A | 302 | A | 303 | A | 305 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCCGAAGG | 1 |
| UGGCUAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCGAAG | 1 |
| GGCUAAA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: