HL_5JPQ_013

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JPQ_013 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.4847

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5JPQ|1|2|A|900
5JPQ|1|2|G|901
5JPQ|1|2|G|902
5JPQ|1|2|U|903
5JPQ|1|2|G|904
5JPQ|1|2|A|905
5JPQ|1|2|A|906
5JPQ|1|2|A|907
5JPQ|1|2|U|908
5JPQ|1|2|U|909

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

KRR1 small subunit processome component

Chain w

uS11