HL_5JPQ_018

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GCCAGGAAAC

Length

10 nucleotides

Bulged bases

5JPQ|1|2|G|1523

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JPQ_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2666

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5JPQ|1|2|G|1480
5JPQ|1|2|C|1481
5JPQ|1|2|C|1482
5JPQ|1|2|A|1483
5JPQ|1|2|G|1484
5JPQ|1|2|G|1523
5JPQ|1|2|A|1524
5JPQ|1|2|A|1525
5JPQ|1|2|A|1526
5JPQ|1|2|C|1527

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain k

Utp30

Chain q

uS7

Chain x

uS9