HL_5JTE_051

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5JTE|1|BA|G|329, 5JTE|1|BA|A|330, 5JTE|1|BA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JTE_051 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1212

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5JTE|1|BA|G|327
5JTE|1|BA|U|328
5JTE|1|BA|G|329
5JTE|1|BA|A|330
5JTE|1|BA|C|331
5JTE|1|BA|A|332
5JTE|1|BA|G|333
5JTE|1|BA|C|334
5JTE|1|BA|C|335

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24