HL_5JTE_096

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JTE_096 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1565

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5JTE|1|BA|U|2324
5JTE|1|BA|G|2325
5JTE|1|BA|C|2326
5JTE|1|BA|A|2327
5JTE|1|BA|A|2328
5JTE|1|BA|U|2329
5JTE|1|BA|G|2330
5JTE|1|BA|G|2331

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27