HL_5JU8_003

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_003 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.2023

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5JU8|1|AA|G|158
5JU8|1|AA|G|159
5JU8|1|AA|A|160
5JU8|1|AA|A|161
5JU8|1|AA|A|162
5JU8|1|AA|C|163

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain BP

50S ribosomal protein L19