HL_5JU8_024

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5JU8|1|AA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1463

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

5JU8|1|AA|G|1089
5JU8|1|AA|U|1090
5JU8|1|AA|U|1091
5JU8|1|AA|A|1092
5JU8|1|AA|A|1093
5JU8|1|AA|G|1094
5JU8|1|AA|U|1095
5JU8|1|AA|C|1096

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AG

30S ribosomal protein S7