HL_5JU8_043

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5JU8|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_043 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.086

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5JU8|1|BA|G|194
5JU8|1|BA|A|195
5JU8|1|BA|A|196
5JU8|1|BA|A|197
5JU8|1|BA|C|198
5JU8|1|BA|A|199
5JU8|1|BA|U|200
5JU8|1|BA|C|201

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28