HL_5JU8_053

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

5JU8|1|BA|U|546, 5JU8|1|BA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_053 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.2018

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5JU8|1|BA|G|543
5JU8|1|BA|C|544
5JU8|1|BA|U|545
5JU8|1|BA|U|546
5JU8|1|BA|A|547
5JU8|1|BA|G|548
5JU8|1|BA|G|549
5JU8|1|BA|C|550

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21