HL_5JU8_103

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5JU8|1|BA|G|2751, 5JU8|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_103 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1049

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5JU8|1|BA|C|2745
5JU8|1|BA|U|2746
5JU8|1|BA|G|2747
5JU8|1|BA|A|2748
5JU8|1|BA|A|2749
5JU8|1|BA|A|2750
5JU8|1|BA|G|2751
5JU8|1|BA|C|2752
5JU8|1|BA|A|2753
5JU8|1|BA|U|2754
5JU8|1|BA|C|2755
5JU8|1|BA|U|2756
5JU8|1|BA|A|2757
5JU8|1|BA|A|2758
5JU8|1|BA|G|2759

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13