HL_5JUO_004

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

5JUO|1|A|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_004 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.3648

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5JUO|1|A|C|190
5JUO|1|A|C|191
5JUO|1|A|U|192
5JUO|1|A|U|193
5JUO|1|A|U|194
5JUO|1|A|G|195

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)