RNA 3D Hub //

5JUO Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5JUO_0011/A/7:17No text annotation
homologous
HL_4V88_186
NA
HL_5JUO_0151/A/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_5JUO_0221/A/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_5JUO_0241/A/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_5JUO_0371/B/38:45No text annotation
homologous
HL_8C3A_001
NA
HL_5JUO_0381/B/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_5JUO_0391/B/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_5JUO_0441/B/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_5JUO_0451/B/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_5JUO_0511/B/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_5JUO_0521/B/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_5JUO_0551/B/763:768No text annotation
geometric
HL_5TBW_018
NA
HL_5JUO_0571/B/876:885No text annotation
homologous
HL_8C3A_020
NA
HL_5JUO_0581/B/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_5JUO_0591/B/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_5JUO_0611/B/1076:1083No text annotation
geometric
HL_5TBW_024
NA
HL_5JUO_0621/B/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_5JUO_0631/B/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_5JUO_0771/B/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_5JUO_0781/B/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_5JUO_0831/B/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_5JUO_0861/B/2253:2263No text annotation
HL_5JUO_0871/B/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_5JUO_0881/B/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_5JUO_0921/B/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_5JUO_1261/B/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_5JUO_0941/B/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_5JUO_0961/B/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_5JUO_0971/B/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_5JUO_0991/B/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_5JUO_1011/B/2920:2926No text annotation
geometric
HL_5TBW_063
NA
HL_5JUO_1021/B/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_5JUO_1071/B/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_5JUO_1101/C/69:89No text annotation
homologous
HL_8P9A_187
HL_68571.1

Problematic loops

#loop idProblemSequence
HL_5JUO_002No text annotation
HL_5JUO_003GNRA related
HL_5JUO_004No text annotation
HL_5JUO_005No text annotation
HL_5JUO_006T-loop with 1 bulged base
HL_5JUO_007Mini UNCG
HL_5JUO_008GNRA related
HL_5JUO_009No text annotation
HL_5JUO_010No text annotation
HL_5JUO_011UNCG
HL_5JUO_012No text annotation
HL_5JUO_013No text annotation
HL_5JUO_120No text annotation
HL_5JUO_014No text annotation
HL_5JUO_016No text annotation
HL_5JUO_017No text annotation
HL_5JUO_018No text annotation
HL_5JUO_019No text annotation
HL_5JUO_020No text annotation
HL_5JUO_021GNRA
HL_5JUO_023No text annotation
HL_5JUO_025GNRA
HL_5JUO_026No text annotation
HL_5JUO_027Anticodon loop related
HL_5JUO_028GNRA
HL_5JUO_029No text annotation
HL_5JUO_030No text annotation
HL_5JUO_031GNRA
HL_5JUO_032GNRA
HL_5JUO_033No text annotation
HL_5JUO_034No text annotation
HL_5JUO_035No text annotation
HL_5JUO_036GNRA variation
HL_5JUO_040No text annotation
HL_5JUO_041T-loop with 2 stacked bulged bases
HL_5JUO_042No text annotation
HL_5JUO_043T-loop with unstacked turn
HL_5JUO_046tRNA D-loop
HL_5JUO_121GNRA
HL_5JUO_047GNRA
HL_5JUO_048No text annotation
HL_5JUO_049No text annotation
HL_5JUO_122No text annotation
HL_5JUO_050GNRA
HL_5JUO_053GNRA
HL_5JUO_054GNRA
HL_5JUO_056GNRA
HL_5JUO_060GNRA
HL_5JUO_064No text annotation
HL_5JUO_065GNRA wlth tandem sheared
HL_5JUO_066Mini UNCG
HL_5JUO_067GNRA
HL_5JUO_068T-loop with 2 stacked bulged bases
HL_5JUO_069Pseudoknot geometry with 3' bulge
HL_5JUO_070GNRA variation
HL_5JUO_071No text annotation
HL_5JUO_123No text annotation
HL_5JUO_072No text annotation
HL_5JUO_124No text annotation
HL_5JUO_073GNRA
HL_5JUO_074No text annotation
HL_5JUO_075No text annotation
HL_5JUO_076No text annotation
HL_5JUO_079GNRA
HL_5JUO_080UNCG
HL_5JUO_081No text annotation
HL_5JUO_082No text annotation
HL_5JUO_084GNRA
HL_5JUO_085GNRA
HL_5JUO_089No text annotation
HL_5JUO_125No text annotation
HL_5JUO_090No text annotation
HL_5JUO_091Mini UNCG
HL_5JUO_093No text annotation
HL_5JUO_095Pseudoknot geometry
HL_5JUO_098Pseudoknot geometry
HL_5JUO_100No text annotation
HL_5JUO_103GNRA
HL_5JUO_104No text annotation
HL_5JUO_127Ribsomal LSU H95
HL_5JUO_105No text annotation
HL_5JUO_106No text annotation
HL_5JUO_108No text annotation
HL_5JUO_109Mini UNCG
HL_5JUO_128Pseudoknot with intercalation
HL_5JUO_111No text annotation
HL_5JUO_112No text annotation
HL_5JUO_113No text annotation
HL_5JUO_114GNRA
HL_5JUO_115No text annotation
HL_5JUO_116No text annotation
HL_5JUO_117No text annotation
HL_5JUO_118No text annotation
HL_5JUO_129No text annotation
HL_5JUO_130No text annotation
HL_5JUO_119No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5JUO_0041/A/42:48,
1/A/431:433		No text annotation
geometric
IL_4V88_387
NA
IL_5JUO_0061/A/58:63,
1/A/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_5JUO_0071/A/64:69,
1/A/82:86		No text annotation
homologous
IL_8C3A_398
NA
IL_5JUO_0111/A/143:149,
1/A/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_5JUO_2271/A/311:316,
1/A/348:355		Kink-turn with non-sequential stacking
homologous
IL_8P9A_391
IL_46174.4
IL_5JUO_0241/A/439:441,
1/A/463:464		Single bulged U
homologous
IL_4V88_407
NA
IL_5JUO_0301/A/550:557,
1/A/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_5JUO_0331/A/616:622,
1/A/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_5JUO_0401/A/751:759,
1/A/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_5JUO_0461/A/893:899,
1/A/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_5JUO_0471/A/985:990,
1/A/1014:1016		Other IL
homologous
IL_4V88_435
NA
IL_5JUO_0491/A/1034:1036,
1/A/1095:1101		No text annotation
homologous
IL_4V88_437
NA
IL_5JUO_2311/A/1111:1118,
1/A/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_8P9A_428
IL_84044.1
IL_5JUO_0531/A/1146:1147,
1/A/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_5JUO_0661/A/1306:1308,
1/A/1317:1318		Minor groove platform
homologous
IL_8C3A_460
NA
IL_5JUO_0721/A/1488:1494,
1/A/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_5JUO_0781/A/1644:1647,
1/A/1753:1757		No text annotation
geometric
IL_2O3V_003
IL_34618.2
IL_5JUO_0801/A/1653:1656,
1/A/1744:1747		Double sheared
homologous
IL_4V88_468
NA
IL_5JUO_2391/A/1653:1658,
1/A/1743:1747		No text annotation
IL_5JUO_0811/A/1656:1658,
1/A/1743:1744		Single bulged U
homologous
IL_4V88_469
NA
IL_5JUO_0881/B/27:28,
1/B/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_5JUO_0891/B/31:38,
1/B/45:53		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_5JUO_0901/B/82:89,
1/B/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_5JUO_0981/B/376:379,
1/B/390:403		No text annotation
homologous
IL_5TBW_014
NA
IL_5JUO_2581/B/404:410,
1/C/13:19		No text annotation
homologous
IL_8CRE_016
NA
IL_5JUO_1021/B/512:513,
1/B/577:579		Single bulged A
homologous
IL_5TBW_018
NA
IL_5JUO_1051/B/668:670,
1/B/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_5JUO_1061/B/680:684,
1/B/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_5JUO_1071/B/725:728,
1/B/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_5JUO_1081/B/752:753,
1/B/779:781		Single bulged A
homologous
IL_8C3A_026
NA
IL_5JUO_1111/B/803:805,
1/B/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_5JUO_1121/B/805:809,
1/B/931:938		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_5JUO_1171/B/907:909,
1/B/919:923		No text annotation
homologous
IL_8C3A_036
NA
IL_5JUO_1181/B/954:956,
1/B/965:967		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_5JUO_1191/B/969:970,
1/B/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_5JUO_1201/B/977:981,
1/B/1102:1104		180 degree turn
homologous
IL_5TBW_036
NA
IL_5JUO_2431/B/983:985,
1/B/1099:1100		Single bulged G
geometric
IL_8C3A_040
NA
IL_5JUO_2591/B/991:998,
1/B/1050:1058		No text annotation
IL_5JUO_1221/B/997:998,
1/B/1050:1052		Minor groove platform
homologous
IL_8C3A_042
NA
IL_5JUO_1231/B/999:1004,
1/B/1046:1049		C-loop
homologous
IL_5TBW_040
NA
IL_5JUO_2451/B/1006:1009,
1/B/1041:1044		Tandem non-canonical cWW pairs
homologous
IL_8P9A_269
IL_71194.2
IL_5JUO_1301/B/1167:1171,
1/B/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_5JUO_1331/B/1187:1194,
1/B/1314:1319		No text annotation
homologous
IL_5TBW_051
NA
IL_5JUO_1341/B/1194:1205,
1/B/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_5JUO_2461/B/1377:1378,
1/B/1428:1430		No text annotation
IL_5JUO_1401/B/1385:1387,
1/B/1420:1421		Single bulged A
homologous
IL_5TBW_058
NA
IL_5JUO_1411/B/1388:1395,
1/B/1415:1419		Kink-turn
homologous
IL_5TBW_059
NA
IL_5JUO_1441/B/1532:1536,
1/B/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_5JUO_1501/B/1669:1670,
1/B/1778:1780		Single bulged C
homologous
IL_8C3A_075
NA
IL_5JUO_1511/B/1670:1671,
1/B/1776:1778		Single stack bend
homologous
IL_8C3A_076
NA
IL_5JUO_1551/B/1883:1889,
1/B/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_5JUO_2481/B/1898:1906,
1/B/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_5JUO_1581/B/1901:1906,
1/B/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_5JUO_1591/B/1918:1923,
1/B/1928:1934		tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_5JUO_1641/B/2196:2199,
1/B/2245:2246		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_5JUO_1651/B/2200:2201,
1/B/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_5JUO_1681/B/2211:2217,
1/B/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_5JUO_1691/B/2276:2277,
1/B/2307:2310		Bulged stacked bases
homologous
IL_5TBW_089
NA
IL_5JUO_1701/B/2277:2288,
1/B/2304:2307		No text annotation
geometric
IL_5TBW_090
NA
IL_5JUO_1721/B/2396:2398,
1/B/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_5JUO_1741/B/2412:2413,
1/B/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_5JUO_1761/B/2520:2526,
1/B/2584:2587		No text annotation
homologous
IL_8C3A_106
NA
IL_5JUO_1771/B/2614:2615,
1/B/2625:2627		Single bulged A
homologous
IL_8C3A_107
NA
IL_5JUO_1791/B/2718:2721,
1/B/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_5JUO_1811/B/2823:2824,
1/B/2865:2867		Major groove platform
homologous
IL_5TBW_102
NA
IL_5JUO_2511/B/2824:2828,
1/B/2862:2865		No text annotation
homologous
IL_8C3A_111
NA
IL_5JUO_1831/B/2826:2828,
1/B/2862:2863		Major groove platform
geometric
IL_5J7L_320
NA
IL_5JUO_1841/B/2828:2830,
1/B/2858:2862		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_5JUO_1861/B/2876:2877,
1/B/2949:2951		Major groove platform
homologous
IL_8C3A_115
NA
IL_5JUO_1891/B/2889:2892,
1/B/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.3
IL_5JUO_1911/B/2960:2961,
1/B/2970:2972		Single bulged A
homologous
IL_5TBW_113
NA
IL_5JUO_1941/B/3047:3051,
1/B/3091:3094		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_5JUO_2611/B/3054:3059,
1/B/3084:3088		No text annotation
homologous
IL_8CRE_127
NA
IL_5JUO_1961/B/3063:3064,
1/B/3077:3080		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_5JUO_2001/B/3177:3179,
1/B/3210:3211		Single bulged A
homologous
IL_5TBW_123
NA
IL_5JUO_2011/B/3179:3188,
1/B/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_5JUO_2021/B/3193:3194,
1/B/3197:3199		Single bulged U
geometric
IL_5TBW_146
NA
IL_5JUO_2071/B/3318:3320,
1/B/3387:3388		Single bulged U
homologous
IL_8C3A_136
NA
IL_5JUO_2091/B/3328:3330,
1/B/3373:3378		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_5JUO_2101/B/3332:3337,
1/B/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_5JUO_2191/D/28:29,
1/D/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_5JUO_2211/D/32:36,
1/D/41:45		Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_5JUO_2221/D/72:80,
1/D/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_5JUO_2231/D/84:87,
1/D/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_5JUO_001Single bulged C
IL_5JUO_002Isolated non-canonical cWW pair
IL_5JUO_003Triple sheared related
IL_5JUO_005Minor groove platform
IL_5JUO_008Tandem non-canonical cWW pairs
IL_5JUO_009Multiple bulged bases
IL_5JUO_010No text annotation
IL_5JUO_225Isolated cWH basepair
IL_5JUO_012No text annotation
IL_5JUO_013Double sheared
IL_5JUO_014Major groove platform with extra cWW
IL_5JUO_015Isolated non-canonical cWW pair
IL_5JUO_016Single bulged A
IL_5JUO_226No text annotation
IL_5JUO_017No text annotation
IL_5JUO_018Isolated non-canonical cWW pair
IL_5JUO_019No text annotation
IL_5JUO_020No text annotation
IL_5JUO_021No text annotation
IL_5JUO_022Isolated cWH basepair
IL_5JUO_023Isolated near basepair
IL_5JUO_025C-loop
IL_5JUO_026Single bulged G
IL_5JUO_027No text annotation
IL_5JUO_228No text annotation
IL_5JUO_028Minor groove platform
IL_5JUO_029Minor groove platform
IL_5JUO_031Single bulged U
IL_5JUO_032Kink-turn related
IL_5JUO_034Isolated non-canonical cWW pair
IL_5JUO_035tSH-tHW-tHS
IL_5JUO_036Isolated non-canonical cWW pair
IL_5JUO_037No text annotation
IL_5JUO_038Major groove minor groove platform; mini C-loop
IL_5JUO_039Isolated non-canonical cWW pair
IL_5JUO_041Major groove platform; stack outside cWW
IL_5JUO_042Tandem non-canonical cWW pairs
IL_5JUO_043No text annotation
IL_5JUO_044Tandem non-canonical cWW pairs
IL_5JUO_229Partly complementary
IL_5JUO_045Tandem non-canonical cWW pairs
IL_5JUO_048tSH-tHW-tHS
IL_5JUO_050Tandem non-canonical cWW pairs
IL_5JUO_230Isolated non-canonical cWW pair
IL_5JUO_051Single bulged U
IL_5JUO_0529x7 Sarcin-Ricin with inserted C; G-bulge
IL_5JUO_054Single bulged G
IL_5JUO_055C-loop
IL_5JUO_232Isolated non-canonical cWW pair
IL_5JUO_056Tandem non-canonical cWW pairs
IL_5JUO_057Minor groove platform
IL_5JUO_058Isolated non-canonical cWW pair
IL_5JUO_059Kink-turn
IL_5JUO_233Other IL
IL_5JUO_060No text annotation
IL_5JUO_061Single bulged U
IL_5JUO_062No text annotation
IL_5JUO_234No text annotation
IL_5JUO_235No text annotation
IL_5JUO_236No text annotation
IL_5JUO_063No text annotation
IL_5JUO_064Single bulged A
IL_5JUO_065Isolated cWH basepair
IL_5JUO_067Isolated non-canonical cWW pair
IL_5JUO_068Minor groove platform
IL_5JUO_237No text annotation
IL_5JUO_069No text annotation
IL_5JUO_070Major groove platform; stack outside cWW
IL_5JUO_071No text annotation
IL_5JUO_073Tandem non-canonical cWW pairs
IL_5JUO_238No text annotation
IL_5JUO_074No text annotation
IL_5JUO_075No text annotation
IL_5JUO_076No text annotation
IL_5JUO_077Isolated non-canonical cWW pair
IL_5JUO_079Isolated non-canonical cWW pair
IL_5JUO_082Isolated non-canonical cWW pair
IL_5JUO_083Double sheared
IL_5JUO_084Isolated non-canonical cWW pair
IL_5JUO_085Tandem non-canonical cWW pairs
IL_5JUO_086Triple sheared
IL_5JUO_087No text annotation
IL_5JUO_091No text annotation
IL_5JUO_092Isolated non-canonical cWW pair
IL_5JUO_240Single stack bend
IL_5JUO_093No text annotation
IL_5JUO_094No text annotation
IL_5JUO_241No text annotation
IL_5JUO_095No text annotation
IL_5JUO_256No text annotation
IL_5JUO_096Single bulged U
IL_5JUO_097Tandem non-canonical cWW pairs
IL_5JUO_257Single bulged A
IL_5JUO_099No text annotation
IL_5JUO_100Isolated non-canonical cWW pair
IL_5JUO_101No text annotation
IL_5JUO_103No text annotation
IL_5JUO_104No text annotation
IL_5JUO_109Single bulged U
IL_5JUO_110No text annotation
IL_5JUO_113Single bulged G
IL_5JUO_242No text annotation
IL_5JUO_114Triple sheared with non-canonical cWW
IL_5JUO_115Major groove platform with extra cWW
IL_5JUO_116Single bulged U
IL_5JUO_121No text annotation
IL_5JUO_244No text annotation
IL_5JUO_124No text annotation
IL_5JUO_125Isolated non-canonical cWW pair
IL_5JUO_126No text annotation
IL_5JUO_127Isolated non-canonical cWW pair
IL_5JUO_128Single bulged G
IL_5JUO_129Isolated non-canonical cWW pair
IL_5JUO_131SSU/LSU pseudoknot
IL_5JUO_132Single bulged U
IL_5JUO_135Single bulged U
IL_5JUO_136Kink-turn
IL_5JUO_137No text annotation
IL_5JUO_138Major groove platform with extra cWW
IL_5JUO_139Isolated cWS basepair
IL_5JUO_142Single bulged A
IL_5JUO_143No text annotation
IL_5JUO_145Single stack bend
IL_5JUO_260No text annotation
IL_5JUO_146No text annotation
IL_5JUO_147No text annotation
IL_5JUO_148No text annotation
IL_5JUO_149Isolated non-canonical cWW pair
IL_5JUO_247Isolated non-canonical cWW pair
IL_5JUO_152No text annotation
IL_5JUO_153No text annotation
IL_5JUO_154No text annotation
IL_5JUO_156No text annotation
IL_5JUO_157Major groove platform; stack outside cWW
IL_5JUO_249Isolated non-canonical cWW pair
IL_5JUO_160Tandem non-canonical cWW pairs
IL_5JUO_161No text annotation
IL_5JUO_162Single bulged A
IL_5JUO_163No text annotation
IL_5JUO_166Single bulged U
IL_5JUO_250No text annotation
IL_5JUO_167Major groove platform with extra pair
IL_5JUO_171No text annotation
IL_5JUO_173Single bulged U
IL_5JUO_175No text annotation
IL_5JUO_178Isolated tHS basepair with bulges
IL_5JUO_180Single stack bend
IL_5JUO_182Isolated non-canonical cWW pair
IL_5JUO_185No text annotation
IL_5JUO_187Isolated non-canonical cWW with bulges
IL_5JUO_188Multiple bulged bases
IL_5JUO_190Isolated non-canonical cWW pair
IL_5JUO_192Double sheared
IL_5JUO_1938x7 Sarcin-Ricin; G-bulge
IL_5JUO_195No text annotation
IL_5JUO_197UAA/GAN
IL_5JUO_198No text annotation
IL_5JUO_262No text annotation
IL_5JUO_199Isolated non-canonical cWW pair
IL_5JUO_203No text annotation
IL_5JUO_204Isolated non-canonical cWW pair
IL_5JUO_205Tandem non-canonical cWW pairs
IL_5JUO_206Tandem non-canonical cWW pairs
IL_5JUO_252Single bulged U
IL_5JUO_208Isolated non-canonical cWW with bulges
IL_5JUO_253No text annotation
IL_5JUO_211Single bulged U
IL_5JUO_212Double sheared; A in syn
IL_5JUO_213Multiple bulged bases
IL_5JUO_214No text annotation
IL_5JUO_215Isolated non-canonical cWW pair
IL_5JUO_216Single bulged U
IL_5JUO_217Single bulged A
IL_5JUO_218Minor groove platform related
IL_5JUO_220Single stack bend
IL_5JUO_254No text annotation
IL_5JUO_255No text annotation
IL_5JUO_263Single stack bend
IL_5JUO_224No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5JUO_0011/A/41:42,
1/A/433:439,
1/A/464:466		No text annotation
homologous
J3_8C3A_082
NA
J3_5JUO_0321/A/760:763,
1/A/773:775,
1/A/785:790		No text annotation
homologous
J3_8P9A_073
J3_97642.2
J3_5JUO_0031/A/881:884,
1/A/928:936,
1/A/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_5JUO_0071/A/1180:1187,
1/A/1198:1209,
1/A/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_5JUO_0091/A/1283:1288,
1/A/1327:1332,
1/A/1419:1424		No text annotation
homologous
J3_4V88_039
NA
J3_5JUO_0101/A/1293:1294,
1/A/1303:1306,
1/A/1318:1322		No text annotation
homologous
J3_8C3A_085
NA
J3_5JUO_0351/B/185:189,
1/B/205:214,
1/B/226:231		No text annotation
homologous
J3_8P9A_044
J3_97456.1
J3_5JUO_0461/B/340:356,
1/B/363:369,
1/C/20:24		No text annotation
J3_5JUO_0471/B/369:376,
1/B/403:404,
1/C/19:20		No text annotation
geometric
J3_4WF9_010
J3_68715.1
J3_5JUO_0481/B/369:379,
1/B/390:404,
1/C/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_5JUO_0141/B/502:503,
1/B/588:597,
1/B/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_5JUO_0371/B/814:820,
1/B/905:907,
1/B/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_5JUO_0161/B/827:831,
1/B/863:867,
1/B/892:898		No text annotation
J3_5JUO_0381/B/986:987,
1/B/1062:1066,
1/B/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_5JUO_0201/B/1488:1491,
1/B/1837:1843,
1/B/1852:1854		No text annotation
homologous
J3_8C3A_007
NA
J3_5JUO_0221/B/1631:1632,
1/B/1641:1645,
1/B/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_5JUO_0411/B/2529:2532,
1/B/2547:2563,
1/B/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_76247.1
J3_5JUO_0421/B/2651:2653,
1/B/2754:2765,
1/B/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_5JUO_0251/B/2664:2666,
1/B/2690:2692,
1/B/2701:2706		No text annotation
homologous
J3_8C3A_010
NA
J3_5JUO_0261/B/2886:2889,
1/B/2914:2916,
1/B/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_5JUO_0431/B/3171:3176,
1/B/3212:3220,
1/B/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J4_5JUO_0011/A/99:107,
1/A/307:309,
1/A/357:361,
1/A/383:384		No text annotation
homologous
J4_8C3A_021
NA
J4_5JUO_0021/A/622:624,
1/A/975:980,
1/A/1021:1032,
1/A/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J4_5JUO_0041/B/185:189,
1/B/205:208,
1/B/212:214,
1/B/226:231		No text annotation
homologous
J4_8P9A_013
J4_43318.1
J4_5JUO_0051/B/340:356,
1/B/363:376,
1/B/403:404,
1/C/19:24		No text annotation
J4_5JUO_0061/B/340:356,
1/B/363:379,
1/B/390:404,
1/C/19:24		No text annotation
J4_5JUO_0071/B/1479:1491,
1/B/1837:1843,
1/B/1852:1859,
1/B/1871:1874		No text annotation
J4_5JUO_0111/B/2192:2194,
1/B/2248:2249,
1/B/2267:2276,
1/B/2310:2315		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_5JUO_0121/B/2654:2658,
1/B/2712:2716,
1/B/2740:2742,
1/B/2751:2753		No text annotation
homologous
J4_8C3A_008
NA
J4_5JUO_0131/B/3010:3014,
1/B/3040:3043,
1/B/3098:3100,
1/B/3134:3136		No text annotation
J5_5JUO_0011/A/31:35,
1/A/473:479,
1/A/509:516,
1/A/536:546,
1/A/592:595		No text annotation
J5_5JUO_0021/A/54:57,
1/A/90:97,
1/A/386:388,
1/A/409:411,
1/A/422:426		No text annotation
homologous
J5_8P9A_017
J5_58574.1
J5_5JUO_0031/A/124:143,
1/A/172:182,
1/A/203:204,
1/A/263:265,
1/A/289:293		No text annotation
J5_5JUO_0041/A/124:143,
1/A/172:182,
1/A/203:204,
1/A/263:267,
1/A/288:293		No text annotation
J5_5JUO_0051/A/636:641,
1/A/693:698,
1/A/740:744,
1/A/807:822,
1/A/850:860		No text annotation
J5_5JUO_0061/B/658:663,
1/B/799:802,
1/B/941:944,
1/B/1375:1376,
1/B/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_5JUO_0071/B/675:678,
1/B/702:706,
1/B/713:721,
1/B/749:751,
1/B/782:787		No text annotation
homologous
J5_8P9A_012
J5_56629.1
J5_5JUO_0081/B/1906:1914,
1/B/1938:1939,
1/B/2109:2110,
1/B/2114:2122,
1/B/2331:2333		No text annotation
homologous
J5_8C3A_004
NA
J5_5JUO_0091/B/2399:2406,
1/B/2815:2823,
1/B/2867:2875,
1/B/2952:2957,
1/B/2975:2980		No text annotation
J5_5JUO_0101/B/2416:2419,
1/B/2611:2614,
1/B/2627:2628,
1/B/2650:2651,
1/B/2798:2804		No text annotation
homologous
J5_8C3A_006
NA
J7_5JUO_0011/B/949:954,
1/B/967:968,
1/B/1114:1117,
1/B/1141:1146,
1/B/1157:1161,
1/B/1338:1339,
1/B/1365:1370		No text annotation
J9_5JUO_0021/B/20:27,
1/B/58:68,
1/B/75:79,
1/B/106:110,
1/B/321:333,
1/C/30:42,
1/C/102:107,
1/C/115:116,
1/C/137:139		No text annotation

Problematic loops

#loop idProblemSequence
J3_5JUO_030No text annotation
J3_5JUO_002No text annotation
J3_5JUO_031No text annotation
J3_5JUO_004No text annotation
J3_5JUO_005No text annotation
J3_5JUO_006No text annotation
J3_5JUO_008No text annotation
J3_5JUO_011No text annotation
J3_5JUO_033No text annotation
J3_5JUO_012No text annotation
J3_5JUO_013No text annotation
J3_5JUO_034No text annotation
J3_5JUO_049No text annotation
J3_5JUO_036No text annotation
J3_5JUO_015No text annotation
J3_5JUO_017No text annotation
J3_5JUO_018No text annotation
J3_5JUO_019No text annotation
J3_5JUO_021No text annotation
J3_5JUO_050No text annotation
J3_5JUO_039No text annotation
J3_5JUO_040No text annotation
J3_5JUO_023No text annotation
J3_5JUO_024No text annotation
J3_5JUO_027No text annotation
J3_5JUO_044No text annotation
J3_5JUO_045No text annotation
J3_5JUO_028No text annotation
J3_5JUO_029No text annotation
J4_5JUO_003No text annotation
J4_5JUO_008No text annotation
J4_5JUO_009No text annotation
J4_5JUO_010No text annotation
J9_5JUO_001No text annotation

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