HL_5JUO_016

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUAACCUUUGGCGAACGUGGCUCUUGGCGAA*C

Length

33 nucleotides

Bulged bases

5JUO|1|A|C|704, 5JUO|1|A|U|711, 5JUO|1|A|U|728, 5JUO|1|A|G|720, 5JUO|1|A|U|721, 5JUO|1|A|G|722, 5JUO|1|A|G|723, 5JUO|1|A|C|724, 5JUO|1|A|U|725, 5JUO|1|A|C|726, 5JUO|1|A|U|727, 5JUO|1|A|U|728, 5JUO|1|A|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|A|G|703
5JUO|1|A|C|704
5JUO|1|A|U|705
5JUO|1|A|A|706
5JUO|1|A|A|707
5JUO|1|A|C|708
5JUO|1|A|C|709
5JUO|1|A|U|710
5JUO|1|A|U|711
5JUO|1|A|U|728
5JUO|1|A|G|729
5JUO|1|A|G|730
5JUO|1|A|C|731
5JUO|1|A|G|732
5JUO|1|A|A|733
5JUO|1|A|A|734
5JUO|1|A|C|735
5JUO|1|A|G|720
5JUO|1|A|U|721
5JUO|1|A|G|722
5JUO|1|A|G|723
5JUO|1|A|C|724
5JUO|1|A|U|725
5JUO|1|A|C|726
5JUO|1|A|U|727
5JUO|1|A|U|728
5JUO|1|A|G|729
5JUO|1|A|G|730
5JUO|1|A|C|731
5JUO|1|A|G|732
5JUO|1|A|A|733
5JUO|1|A|A|734
*
5JUO|1|A|C|735

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)