HL_5JUO_023

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5JUO|1|A|U|1059, 5JUO|1|A|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|A|U|1055
5JUO|1|A|U|1056
5JUO|1|A|U|1057
5JUO|1|A|U|1058
5JUO|1|A|U|1059
5JUO|1|A|U|1060
5JUO|1|A|A|1061
5JUO|1|A|A|1062
5JUO|1|A|U|1063
5JUO|1|A|G|1064

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain YA

eS1 (yeast S1)

Chain YB

eS27 (yeast S27)