HL_5JUO_030

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

5JUO|1|A|U|1362, 5JUO|1|A|U|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_030 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2073

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5JUO|1|A|C|1359
5JUO|1|A|A|1360
5JUO|1|A|U|1361
5JUO|1|A|U|1362
5JUO|1|A|U|1363
5JUO|1|A|G|1364

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain CB

uS7 (yeast S5)

Chain NB

uS9 (yeast S16)

Chain QB

eS19 (yeast S19)