HL_5JUO_035

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGAAGGGCAUCUCUCCAUCU*C

Length

22 nucleotides

Bulged bases

5JUO|1|A|U|1704, 5JUO|1|A|C|1705

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|A|G|1690
5JUO|1|A|A|1691
5JUO|1|A|G|1692
5JUO|1|A|A|1693
5JUO|1|A|A|1694
5JUO|1|A|G|1695
5JUO|1|A|G|1696
5JUO|1|A|G|1697
5JUO|1|A|C|1706
5JUO|1|A|A|1707
5JUO|1|A|U|1708
5JUO|1|A|C|1709
5JUO|1|A|U|1710
5JUO|1|A|C|1711
5JUO|1|A|U|1704
5JUO|1|A|C|1705
5JUO|1|A|C|1706
5JUO|1|A|A|1707
5JUO|1|A|U|1708
5JUO|1|A|C|1709
5JUO|1|A|U|1710
*
5JUO|1|A|C|1711

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)