HL_5JUO_046

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAGUGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_046 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3367

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

5JUO|1|B|C|356
5JUO|1|B|A|357
5JUO|1|B|G|358
5JUO|1|B|U|359
5JUO|1|B|G|360
5JUO|1|B|A|361
5JUO|1|B|U|362
5JUO|1|B|G|363

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain H

uL4 (yeast L4)

Chain OA

eL37 (yeast L37)

Chain QA

eL39 (yeast L39)