HL_5JUO_068

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_068 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.3569

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5JUO|1|B|A|1462
5JUO|1|B|U|1463
5JUO|1|B|G|1464
5JUO|1|B|A|1465
5JUO|1|B|G|1466
5JUO|1|B|A|1467
5JUO|1|B|A|1468
5JUO|1|B|C|1469
5JUO|1|B|U|1470

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain IA

eL31 (yeast L31)

Chain U

uL22 (yeast L17)

Chain W

eL19 (yeast L19)