HL_5JUO_069

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

5JUO|1|B|G|1507, 5JUO|1|B|U|1511

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_069 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.3931

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5JUO|1|B|A|1506
5JUO|1|B|G|1507
5JUO|1|B|C|1508
5JUO|1|B|A|1509
5JUO|1|B|G|1510
5JUO|1|B|U|1511
5JUO|1|B|U|1512

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain U

uL22 (yeast L17)

Chain W

eL19 (yeast L19)