HL_5JUO_074
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUUAUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 5JUO|1|B|U|1687
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_074 not in the Motif Atlas
- Homologous match to HL_8C3A_037
- Geometric discrepancy: 0.2535
- The information below is about HL_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5JUO|1|B|G|1680
5JUO|1|B|U|1681
5JUO|1|B|U|1682
5JUO|1|B|A|1683
5JUO|1|B|U|1684
5JUO|1|B|C|1685
5JUO|1|B|U|1686
5JUO|1|B|U|1687
5JUO|1|B|U|1688
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain IA
- eL31 (yeast L31)
- Chain W
- eL19 (yeast L19)
- Chain Z
- eL22 (yeast L22)
Coloring options: