HL_5JUO_076

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

5JUO|1|B|C|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_076 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2418

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5JUO|1|B|C|1759
5JUO|1|B|A|1760
5JUO|1|B|C|1761
5JUO|1|B|C|1762
5JUO|1|B|U|1763
5JUO|1|B|U|1764
5JUO|1|B|U|1765
5JUO|1|B|G|1766

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain W

eL19 (yeast L19)

Chain Z

eL22 (yeast L22)