HL_5JUO_084

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

5JUO|1|B|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_084 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2904

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5JUO|1|B|A|2164
5JUO|1|B|G|2165
5JUO|1|B|A|2166
5JUO|1|B|A|2167
5JUO|1|B|A|2168
5JUO|1|B|G|2169
5JUO|1|B|U|2170

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain L

eL8 (yeast L8)

Chain S

eL15 (yeast L15)