HL_5JUO_086

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

5JUO|1|B|A|2256, 5JUO|1|B|U|2258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|G|2253
5JUO|1|B|U|2254
5JUO|1|B|A|2255
5JUO|1|B|A|2256
5JUO|1|B|C|2257
5JUO|1|B|U|2258
5JUO|1|B|A|2259
5JUO|1|B|U|2260
5JUO|1|B|G|2261
5JUO|1|B|A|2262
5JUO|1|B|C|2263

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain BC

eS30 (yeast S30)

Chain DC

yeast eEF2

Chain EC

IRES