HL_5JUO_090

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

5JUO|1|B|C|2539, 5JUO|1|B|A|2540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|G|2534
5JUO|1|B|A|2535
5JUO|1|B|A|2536
5JUO|1|B|U|2537
5JUO|1|B|U|2538
5JUO|1|B|C|2539
5JUO|1|B|A|2540
5JUO|1|B|U|2541
5JUO|1|B|U|2542
5JUO|1|B|U|2543
5JUO|1|B|U|2544
5JUO|1|B|C|2545

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain L

eL8 (yeast L8)

Chain LA

eL34 (yeast L34)

Chain YA

eS1 (yeast S1)