HL_5JUO_091

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5JUO|1|B|C|2572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_091 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.292

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

5JUO|1|B|C|2568
5JUO|1|B|A|2569
5JUO|1|B|U|2570
5JUO|1|B|U|2571
5JUO|1|B|C|2572
5JUO|1|B|G|2573

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain EA

eL27 (yeast L27)