HL_5JUO_092
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5JUO|1|B|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_092 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.25
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5JUO|1|B|C|2616
5JUO|1|B|U|2617
5JUO|1|B|G|2618
5JUO|1|B|G|2619
5JUO|1|B|G|2620
5JUO|1|B|G|2621
5JUO|1|B|C|2622
5JUO|1|B|G|2623
5JUO|1|B|G|2624
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain GA
- eL29 (yeast L29)
- Chain N
- uL16 (yeast L10)
Coloring options: