HL_5JUO_093

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAACGAUAACGC

Length

15 nucleotides

Bulged bases

5JUO|1|B|A|2637, 5JUO|1|B|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|G|2632
5JUO|1|B|U|2633
5JUO|1|B|U|2634
5JUO|1|B|A|2635
5JUO|1|B|A|2636
5JUO|1|B|A|2637
5JUO|1|B|C|2638
5JUO|1|B|G|2639
5JUO|1|B|A|2640
5JUO|1|B|U|2641
5JUO|1|B|A|2642
5JUO|1|B|A|2643
5JUO|1|B|C|2644
5JUO|1|B|G|2645
5JUO|1|B|C|2646

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain D

5S ribosomal RNA; 5S rRNA

Chain GA

eL29 (yeast L29)

Chain N

uL16 (yeast L10)

Chain Y

eL21 (yeast L21)