HL_5JUO_103
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUO_103 not in the Motif Atlas
- Geometric match to HL_5FQ5_003
- Geometric discrepancy: 0.1693
- The information below is about HL_5FQ5_003
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
5JUO|1|B|C|3025
5JUO|1|B|G|3026
5JUO|1|B|A|3027
5JUO|1|B|G|3028
5JUO|1|B|A|3029
5JUO|1|B|G|3030
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain DC
- yeast eEF2
- Chain M
- uL6 (yeast L9)
- Chain RA
- eL40 (yeast L40)
Coloring options: