HL_5JUO_110
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases (A, C, G, U)
- 86U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUO|1|C|U|69
5JUO|1|C|G|70
5JUO|1|C|A|71
5JUO|1|C|A|72
5JUO|1|C|U|73
5JUO|1|C|U|74
5JUO|1|C|G|75
5JUO|1|C|C|76
5JUO|1|C|A|77
5JUO|1|C|G|78
5JUO|1|C|A|79
5JUO|1|C|A|80
5JUO|1|C|U|81
5JUO|1|C|U|82
5JUO|1|C|C|83
5JUO|1|C|C|84
5JUO|1|C|G|85
5JUO|1|C|U|86
5JUO|1|C|G|87
5JUO|1|C|A|88
5JUO|1|C|A|89
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- uL24 (yeast L26)
- Chain MA
- uL29 (yeast L35)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
Coloring options: