HL_5JUO_113

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

5JUO|1|D|C|39, 5JUO|1|D|C|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_113 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2023

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5JUO|1|D|C|36
5JUO|1|D|G|37
5JUO|1|D|U|38
5JUO|1|D|C|39
5JUO|1|D|C|40
5JUO|1|D|G|41

Current chains

Chain D

5S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain I

uL18 (yeast L5)

Chain O

uL5 (yeast L11)