HL_5JUO_116

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUGCUGUACGUGUA

Length

15 nucleotides

Bulged bases

5JUO|1|EC|A|6849

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|EC|U|6834
5JUO|1|EC|U|6835
5JUO|1|EC|U|6836
5JUO|1|EC|G|6837
5JUO|1|EC|C|6838
5JUO|1|EC|U|6839
5JUO|1|EC|G|6847
5JUO|1|EC|U|6848
5JUO|1|EC|A|6849
5JUO|1|EC|C|6850
5JUO|1|EC|G|6851
5JUO|1|EC|U|6852
5JUO|1|EC|G|6853
5JUO|1|EC|U|6854
5JUO|1|EC|A|6855

Current chains

Chain EC

IRES

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain CB

uS7 (yeast S5)

Chain LB

uS11 (yeast S14)