HL_5JUO_125

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUU

Length

66 nucleotides

Bulged bases

5JUO|1|B|A|2458, 5JUO|1|B|A|2459, 5JUO|1|B|U|2460, 5JUO|1|B|C|2470, 5JUO|1|B|U|2471, 5JUO|1|B|U|2472, 5JUO|1|B|C|2473, 5JUO|1|B|C|2492, 5JUO|1|B|U|2498, 5JUO|1|B|U|2501, 5JUO|1|B|A|2502

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|A|2441
5JUO|1|B|G|2442
5JUO|1|B|A|2443
5JUO|1|B|C|2444
5JUO|1|B|A|2445
5JUO|1|B|U|2446
5JUO|1|B|A|2447
5JUO|1|B|G|2448
5JUO|1|B|A|2449
5JUO|1|B|G|2450
5JUO|1|B|G|2451
5JUO|1|B|G|2452
5JUO|1|B|U|2453
5JUO|1|B|G|2454
5JUO|1|B|U|2455
5JUO|1|B|A|2456
5JUO|1|B|G|2457
5JUO|1|B|A|2458
5JUO|1|B|A|2459
5JUO|1|B|U|2460
5JUO|1|B|A|2461
5JUO|1|B|A|2462
5JUO|1|B|G|2463
5JUO|1|B|U|2464
5JUO|1|B|G|2465
5JUO|1|B|G|2466
5JUO|1|B|G|2467
5JUO|1|B|A|2468
5JUO|1|B|G|2469
5JUO|1|B|C|2470
5JUO|1|B|U|2471
5JUO|1|B|U|2472
5JUO|1|B|C|2473
5JUO|1|B|G|2474
5JUO|1|B|G|2475
5JUO|1|B|C|2476
5JUO|1|B|G|2477
5JUO|1|B|C|2478
5JUO|1|B|C|2479
5JUO|1|B|A|2480
5JUO|1|B|G|2481
5JUO|1|B|U|2482
5JUO|1|B|G|2483
5JUO|1|B|A|2484
5JUO|1|B|A|2485
5JUO|1|B|A|2486
5JUO|1|B|U|2487
5JUO|1|B|A|2488
5JUO|1|B|C|2489
5JUO|1|B|C|2490
5JUO|1|B|A|2491
5JUO|1|B|C|2492
5JUO|1|B|U|2493
5JUO|1|B|A|2494
5JUO|1|B|C|2495
5JUO|1|B|C|2496
5JUO|1|B|U|2497
5JUO|1|B|U|2498
5JUO|1|B|U|2499
5JUO|1|B|A|2500
5JUO|1|B|U|2501
5JUO|1|B|A|2502
5JUO|1|B|G|2503
5JUO|1|B|U|2504
5JUO|1|B|U|2505
5JUO|1|B|U|2506

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain E

uL1 (yeast L1)

Chain EC

IRES

Chain L

eL8 (yeast L8)

Chain NA

eL36 (yeast L36)

Chain S

eL15 (yeast L15)