HL_5JUO_129

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGGGCAA

Length

8 nucleotides

Bulged bases

5JUO|1|EC|U|6904

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUO_129 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3577

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5JUO|1|EC|U|6903
5JUO|1|EC|U|6904
5JUO|1|EC|G|6905
5JUO|1|EC|G|6906
5JUO|1|EC|G|6907
5JUO|1|EC|C|6908
5JUO|1|EC|A|6909
5JUO|1|EC|A|6910

Current chains

Chain EC

IRES

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain DC

yeast eEF2