HL_5JUP_013

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCCCAUUCGGGUC

Length

14 nucleotides

Bulged bases

5JUP|1|A|A|492, 5JUP|1|A|U|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUP|1|A|G|487
5JUP|1|A|G|488
5JUP|1|A|C|489
5JUP|1|A|C|490
5JUP|1|A|C|491
5JUP|1|A|A|492
5JUP|1|A|U|493
5JUP|1|A|U|494
5JUP|1|A|C|495
5JUP|1|A|G|496
5JUP|1|A|G|497
5JUP|1|A|G|498
5JUP|1|A|U|499
5JUP|1|A|C|500

Current chains

Chain A

18S ribosomal RNA

Nearby chains