5JUP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5JUP_001 | 1/A/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_5JUP_006 | 1/A/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_5JUP_008 | 1/A/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_5JUP_009 | 1/A/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_5JUP_010 | 1/A/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_5JUP_013 | 1/A/487:500 | No text annotation | ||
| HL_5JUP_015 | 1/A/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_5JUP_017 | 1/A/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_5JUP_021 | 1/A/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_5JUP_023 | 1/A/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_5JUP_024 | 1/A/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_5JUP_025 | 1/A/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_5JUP_027 | 1/A/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_5JUP_033 | 1/A/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_5JUP_036 | 1/B/38:45 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_5JUP_037 | 1/B/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_5JUP_038 | 1/B/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_5JUP_039 | 1/B/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_5JUP_040 | 1/B/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_5JUP_041 | 1/B/208:212 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_5JUP_042 | 1/B/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_5JUP_043 | 1/B/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_5JUP_044 | 1/B/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_5JUP_045 | 1/B/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_5JUP_046 | 1/B/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_5JUP_049 | 1/B/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_5JUP_050 | 1/B/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_5JUP_126 | 1/B/687:693 | No text annotation | geometric HL_5J7L_151 NA | |
| HL_5JUP_052 | 1/B/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_5JUP_054 | 1/B/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_5JUP_056 | 1/B/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_5JUP_057 | 1/B/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_5JUP_058 | 1/B/958:963 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_5JUP_060 | 1/B/1076:1083 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_5JUP_061 | 1/B/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_5JUP_062 | 1/B/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_5JUP_063 | 1/B/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_5JUP_065 | 1/B/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_5JUP_066 | 1/B/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_5JUP_067 | 1/B/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_5JUP_068 | 1/B/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_5JUP_069 | 1/B/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_5JUP_071 | 1/B/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_5JUP_072 | 1/B/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_5JUP_073 | 1/B/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_5JUP_074 | 1/B/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_5JUP_076 | 1/B/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_5JUP_077 | 1/B/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_5JUP_078 | 1/B/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_5JUP_079 | 1/B/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_5JUP_081 | 1/B/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_5JUP_082 | 1/B/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_5JUP_083 | 1/B/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_5JUP_084 | 1/B/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_5JUP_086 | 1/B/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_5JUP_087 | 1/B/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_5JUP_088 | 1/B/2441:2506 | No text annotation | ||
| HL_5JUP_091 | 1/B/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_5JUP_092 | 1/B/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_5JUP_093 | 1/B/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_5JUP_094 | 1/B/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_5JUP_095 | 1/B/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_5JUP_096 | 1/B/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_5JUP_097 | 1/B/2776:2784 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_5JUP_098 | 1/B/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_5JUP_099 | 1/B/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_5JUP_100 | 1/B/2920:2926 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_5JUP_101 | 1/B/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_5JUP_102 | 1/B/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_5JUP_103 | 1/B/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_5JUP_104 | 1/B/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_5JUP_106 | 1/B/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_5JUP_107 | 1/B/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_5JUP_122 | 1/C/47:56 | No text annotation | homologous HL_8P4V_072 NA | |
| HL_5JUP_109 | 1/C/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_5JUP_110 | 1/C/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_5JUP_111 | 1/C/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_5JUP_123 | 1/D/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_5JUP_112 | 1/D/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_5JUP_113 | 1/D/88:93 | GNRA | homologous HL_5TBW_186 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5JUP_002 | No text annotation | ||
| HL_5JUP_003 | GNRA related | ||
| HL_5JUP_004 | No text annotation | ||
| HL_5JUP_005 | No text annotation | ||
| HL_5JUP_007 | No text annotation | ||
| HL_5JUP_011 | UNCG | ||
| HL_5JUP_012 | No text annotation | ||
| HL_5JUP_014 | No text annotation | ||
| HL_5JUP_016 | No text annotation | ||
| HL_5JUP_018 | No text annotation | ||
| HL_5JUP_125 | No text annotation | ||
| HL_5JUP_019 | Pseudoknot geometry | ||
| HL_5JUP_020 | No text annotation | ||
| HL_5JUP_119 | No text annotation | ||
| HL_5JUP_022 | No text annotation | ||
| HL_5JUP_026 | Anticodon loop related | ||
| HL_5JUP_028 | No text annotation | ||
| HL_5JUP_029 | No text annotation | ||
| HL_5JUP_030 | GNRA | ||
| HL_5JUP_031 | GNRA | ||
| HL_5JUP_032 | No text annotation | ||
| HL_5JUP_034 | No text annotation | ||
| HL_5JUP_035 | No text annotation | ||
| HL_5JUP_047 | No text annotation | ||
| HL_5JUP_120 | No text annotation | ||
| HL_5JUP_048 | No text annotation | ||
| HL_5JUP_051 | No text annotation | ||
| HL_5JUP_053 | GNRA | ||
| HL_5JUP_055 | GNRA | ||
| HL_5JUP_059 | GNRA | ||
| HL_5JUP_064 | GNRA wlth tandem sheared | ||
| HL_5JUP_070 | GNRA related | ||
| HL_5JUP_075 | No text annotation | ||
| HL_5JUP_080 | No text annotation | ||
| HL_5JUP_085 | No text annotation | ||
| HL_5JUP_121 | No text annotation | ||
| HL_5JUP_089 | No text annotation | ||
| HL_5JUP_090 | No text annotation | ||
| HL_5JUP_105 | No text annotation | ||
| HL_5JUP_108 | Mini UNCG | ||
| HL_5JUP_114 | No text annotation | ||
| HL_5JUP_124 | No text annotation | ||
| HL_5JUP_127 | No text annotation | ||
| HL_5JUP_115 | No text annotation | ||
| HL_5JUP_116 | No text annotation | ||
| HL_5JUP_117 | No text annotation | ||
| HL_5JUP_118 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5JUP_001 | 1/A/24:26, 1/A/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_5JUP_002 | 1/A/35:37, 1/A/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_5JUP_003 | 1/A/37:41, 1/A/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_5JUP_004 | 1/A/42:48, 1/A/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_5JUP_005 | 1/A/50:52, 1/A/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_5JUP_008 | 1/A/109:112, 1/A/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_5JUP_009 | 1/A/113:116, 1/A/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_5JUP_010 | 1/A/117:122, 1/A/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_5JUP_236 | 1/A/265:267, 1/A/288:289 | Single bulged A | homologous IL_8P9A_388 IL_14190.2 | |
| IL_5JUP_019 | 1/A/311:316, 1/A/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_5JUP_020 | 1/A/318:323, 1/A/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_5JUP_021 | 1/A/363:365, 1/A/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_5JUP_022 | 1/A/389:391, 1/A/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5JUP_023 | 1/A/411:413, 1/A/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_5JUP_030 | 1/A/550:557, 1/A/587:588 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_5JUP_031 | 1/A/557:559, 1/A/586:587 | Single bulged U | geometric IL_3D2V_001 IL_97561.3 | |
| IL_5JUP_032 | 1/A/562:568, 1/A/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_5JUP_033 | 1/A/616:622, 1/A/1104:1105 | No text annotation | geometric IL_4V88_416 NA | |
| IL_5JUP_035 | 1/A/627:631, 1/A/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_5JUP_240 | 1/A/748:750, 1/A/799:801 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_71625.3 | |
| IL_5JUP_040 | 1/A/751:759, 1/A/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_5JUP_041 | 1/A/817:822, 1/A/850:854 | No text annotation | ||
| IL_5JUP_042 | 1/A/865:866, 1/A/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.2 | |
| IL_5JUP_260 | 1/A/868:869, 1/A/958:960 | Single bulged U | geometric IL_8P9A_427 IL_97561.3 | |
| IL_5JUP_047 | 1/A/1034:1036, 1/A/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_5JUP_048 | 1/A/1041:1044, 1/A/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_5JUP_049 | 1/A/1051:1053, 1/A/1066:1067 | Single bulged U | geometric IL_5J7L_046 NA | |
| IL_5JUP_050 | 1/A/1111:1118, 1/A/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_5JUP_244 | 1/A/1272:1278, 1/A/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_5JUP_062 | 1/A/1276:1278, 1/A/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_5JUP_063 | 1/A/1280:1281, 1/A/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_5JUP_064 | 1/A/1290:1292, 1/A/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_5JUP_065 | 1/A/1306:1308, 1/A/1317:1318 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_5JUP_246 | 1/A/1480:1486, 1/A/1520:1527 | No text annotation | ||
| IL_5JUP_077 | 1/A/1644:1647, 1/A/1753:1757 | No text annotation | homologous IL_8C3A_473 NA | |
| IL_5JUP_078 | 1/A/1650:1652, 1/A/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_5JUP_079 | 1/A/1653:1656, 1/A/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_5JUP_080 | 1/A/1656:1658, 1/A/1743:1744 | No text annotation | ||
| IL_5JUP_081 | 1/A/1665:1667, 1/A/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_5JUP_082 | 1/A/1669:1672, 1/A/1729:1732 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_5JUP_083 | 1/A/1672:1674, 1/A/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_5JUP_084 | 1/A/1675:1678, 1/A/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_4EYA_003 IL_71194.2 | |
| IL_5JUP_087 | 1/B/7:8, 1/C/150:152 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_5JUP_262 | 1/B/13:15, 1/C/144:145 | No text annotation | homologous IL_8CRE_003 NA | |
| IL_5JUP_089 | 1/B/27:28, 1/B/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_5JUP_090 | 1/B/31:38, 1/B/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_5JUP_091 | 1/B/82:89, 1/B/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_5JUP_092 | 1/B/123:124, 1/B/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_5JUP_093 | 1/B/125:127, 1/B/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_5JUP_097 | 1/B/189:191, 1/B/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_5JUP_098 | 1/B/337:339, 1/C/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_5JUP_099 | 1/B/376:379, 1/B/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_5JUP_263 | 1/B/404:410, 1/C/13:19 | No text annotation | homologous IL_8CRE_016 NA | |
| IL_5JUP_101 | 1/B/429:431, 1/B/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_5JUP_103 | 1/B/512:513, 1/B/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_5JUP_104 | 1/B/517:525, 1/B/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_5JUP_105 | 1/B/531:538, 1/B/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_5JUP_106 | 1/B/668:670, 1/B/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_5JUP_107 | 1/B/680:684, 1/B/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_5JUP_108 | 1/B/725:728, 1/B/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_5JUP_109 | 1/B/752:753, 1/B/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_5JUP_110 | 1/B/755:756, 1/B/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_5JUP_111 | 1/B/758:763, 1/B/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_5JUP_112 | 1/B/803:805, 1/B/938:940 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_5JUP_113 | 1/B/805:809, 1/B/931:938 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_5JUP_114 | 1/B/833:834, 1/B/859:861 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_5JUP_115 | 1/B/834:838, 1/B/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_5JUP_116 | 1/B/869:872, 1/B/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_5JUP_117 | 1/B/873:875, 1/B/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_5JUP_118 | 1/B/907:909, 1/B/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_5JUP_119 | 1/B/954:956, 1/B/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_5JUP_120 | 1/B/969:970, 1/B/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_5JUP_121 | 1/B/977:981, 1/B/1102:1104 | 180 degree turn | homologous IL_5TBW_036 NA | |
| IL_5JUP_122 | 1/B/983:985, 1/B/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_5JUP_123 | 1/B/991:997, 1/B/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_5JUP_124 | 1/B/997:998, 1/B/1050:1052 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_5JUP_125 | 1/B/999:1004, 1/B/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_5JUP_250 | 1/B/1006:1009, 1/B/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_5JUP_127 | 1/B/1009:1011, 1/B/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_5JUP_129 | 1/B/1069:1071, 1/B/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_5JUP_130 | 1/B/1074:1076, 1/B/1083:1084 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_5JUP_131 | 1/B/1120:1122, 1/B/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_5JUP_132 | 1/B/1167:1171, 1/B/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_5JUP_133 | 1/B/1173:1180, 1/B/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_5JUP_134 | 1/B/1180:1182, 1/B/1324:1325 | Single bulged U | homologous IL_8C3A_053 NA | |
| IL_5JUP_135 | 1/B/1187:1194, 1/B/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_5JUP_136 | 1/B/1194:1205, 1/B/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_5JUP_137 | 1/B/1207:1209, 1/B/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_5JUP_141 | 1/B/1376:1378, 1/B/1428:1431 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_5JUP_142 | 1/B/1385:1387, 1/B/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_5JUP_143 | 1/B/1388:1395, 1/B/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_5JUP_144 | 1/B/1398:1400, 1/B/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_5JUP_145 | 1/B/1444:1450, 1/B/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_5JUP_252 | 1/B/1501:1505, 1/B/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_5JUP_147 | 1/B/1532:1536, 1/B/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_5JUP_253 | 1/B/1618:1620, 1/B/1825:1826 | No text annotation | geometric IL_8VTW_005 NA | |
| IL_5JUP_254 | 1/B/1623:1624, 1/B/1819:1822 | Major groove platform related | homologous IL_8P9A_293 IL_48076.8 | |
| IL_5JUP_151 | 1/B/1627:1631, 1/B/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_5JUP_152 | 1/B/1645:1649, 1/B/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_5JUP_153 | 1/B/1661:1663, 1/B/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_5JUP_154 | 1/B/1669:1670, 1/B/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_5JUP_155 | 1/B/1670:1671, 1/B/1776:1778 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_5JUP_156 | 1/B/1694:1698, 1/B/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_5JUP_157 | 1/B/1702:1707, 1/B/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_5JUP_158 | 1/B/1711:1717, 1/B/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_5JUP_159 | 1/B/1883:1889, 1/B/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_5JUP_160 | 1/B/1895:1897, 1/B/2338:2340 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_5JUP_161 | 1/B/1898:1901, 1/B/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_5JUP_255 | 1/B/1898:1906, 1/B/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_5JUP_162 | 1/B/1901:1906, 1/B/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_5JUP_163 | 1/B/1918:1923, 1/B/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_5JUP_164 | 1/B/1940:1942, 1/B/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_5JUP_165 | 1/B/1947:1948, 1/B/2098:2101 | No text annotation | geometric IL_5TBW_080 NA | |
| IL_5JUP_168 | 1/B/1955:1958, 1/B/2079:2083 | No text annotation | ||
| IL_5JUP_169 | 1/B/2128:2129, 1/B/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_5JUP_170 | 1/B/2156:2161, 1/B/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_5JUP_171 | 1/B/2196:2199, 1/B/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_5JUP_172 | 1/B/2200:2201, 1/B/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_5JUP_173 | 1/B/2204:2210, 1/B/2235:2238 | No text annotation | ||
| IL_5JUP_174 | 1/B/2211:2217, 1/B/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_5JUP_175 | 1/B/2276:2277, 1/B/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_5JUP_176 | 1/B/2277:2288, 1/B/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_5JUP_177 | 1/B/2391:2394, 1/B/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_5JUP_178 | 1/B/2396:2398, 1/B/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_5JUP_179 | 1/B/2409:2411, 1/B/2811:2812 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_5JUP_180 | 1/B/2412:2413, 1/B/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_5JUP_181 | 1/B/2423:2425, 1/B/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_5JUP_182 | 1/B/2520:2526, 1/B/2584:2587 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_5JUP_183 | 1/B/2614:2615, 1/B/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_5JUP_184 | 1/B/2666:2668, 1/B/2686:2690 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_5JUP_185 | 1/B/2718:2721, 1/B/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_5JUP_186 | 1/B/2770:2773, 1/B/2787:2788 | Single stack bend | homologous IL_5TBW_101 NA | |
| IL_5JUP_187 | 1/B/2823:2824, 1/B/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_5JUP_188 | 1/B/2824:2826, 1/B/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_5JUP_189 | 1/B/2826:2828, 1/B/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_5JUP_190 | 1/B/2828:2830, 1/B/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_5JUP_191 | 1/B/2835:2839, 1/B/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_5JUP_192 | 1/B/2876:2877, 1/B/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_5JUP_193 | 1/B/2879:2881, 1/B/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_5JUP_194 | 1/B/2881:2882, 1/B/2940:2943 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_5JUP_195 | 1/B/2889:2891, 1/B/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_5JUP_257 | 1/B/2889:2892, 1/B/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.3 | |
| IL_5JUP_196 | 1/B/2891:2892, 1/B/2909:2912 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_5JUP_197 | 1/B/2918:2920, 1/B/2926:2928 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_5JUP_198 | 1/B/2960:2961, 1/B/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_5JUP_199 | 1/B/3004:3007, 1/B/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_5JUP_200 | 1/B/3012:3014, 1/B/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_5JUP_201 | 1/B/3018:3025, 1/B/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_5JUP_202 | 1/B/3047:3051, 1/B/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_5JUP_203 | 1/B/3054:3059, 1/B/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_5JUP_204 | 1/B/3063:3064, 1/B/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_5JUP_205 | 1/B/3103:3107, 1/B/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_5JUP_208 | 1/B/3177:3179, 1/B/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_5JUP_209 | 1/B/3179:3188, 1/B/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_5JUP_210 | 1/B/3193:3194, 1/B/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_5JUP_211 | 1/B/3225:3229, 1/B/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_5JUP_213 | 1/B/3235:3238, 1/B/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_71194.2 | |
| IL_5JUP_214 | 1/B/3300:3303, 1/B/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_5JUP_215 | 1/B/3318:3320, 1/B/3387:3388 | Single bulged U | geometric IL_5TBW_130 NA | |
| IL_5JUP_216 | 1/B/3324:3325, 1/B/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_5JUP_217 | 1/B/3328:3330, 1/B/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_5JUP_218 | 1/B/3332:3337, 1/B/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_5JUP_219 | 1/B/3340:3342, 1/B/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_5JUP_222 | 1/C/44:64, 1/C/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_5JUP_223 | 1/C/64:66, 1/C/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_5JUP_224 | 1/C/68:69, 1/C/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_5JUP_225 | 1/D/15:16, 1/D/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_5JUP_226 | 1/D/21:27, 1/D/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_5JUP_227 | 1/D/28:29, 1/D/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_5JUP_229 | 1/D/32:36, 1/D/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_5JUP_230 | 1/D/72:80, 1/D/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_5JUP_231 | 1/D/84:87, 1/D/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_5JUP_259 | 1/EC/6767:6782, 1/EC/6814:6824 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5JUP_006 | No text annotation | ||
| IL_5JUP_007 | No text annotation | ||
| IL_5JUP_011 | tWH-tWH-tHW-tHW | ||
| IL_5JUP_234 | tWH-tWH-tHW-tHW | ||
| IL_5JUP_012 | Tandem non-canonical cWW pairs | ||
| IL_5JUP_235 | No text annotation | ||
| IL_5JUP_013 | Double sheared | ||
| IL_5JUP_014 | Major groove platform with extra cWW | ||
| IL_5JUP_015 | Isolated non-canonical cWW pair | ||
| IL_5JUP_016 | Isolated non-canonical cWW pair | ||
| IL_5JUP_017 | No text annotation | ||
| IL_5JUP_018 | Isolated non-canonical cWW pair | ||
| IL_5JUP_237 | Single bulged U | ||
| IL_5JUP_024 | Single bulged U | ||
| IL_5JUP_025 | C-loop | ||
| IL_5JUP_026 | Single bulged G | ||
| IL_5JUP_027 | No text annotation | ||
| IL_5JUP_028 | Minor groove platform with extra cWW | ||
| IL_5JUP_238 | Minor groove platform | ||
| IL_5JUP_029 | Minor groove platform | ||
| IL_5JUP_034 | Isolated non-canonical cWW pair | ||
| IL_5JUP_036 | Isolated non-canonical cWW pair | ||
| IL_5JUP_239 | No text annotation | ||
| IL_5JUP_037 | No text annotation | ||
| IL_5JUP_038 | Major groove minor groove platform; mini C-loop | ||
| IL_5JUP_039 | Tandem non-canonical cWW pairs | ||
| IL_5JUP_241 | Isolated non-canonical cWW pair | ||
| IL_5JUP_043 | Isolated non-canonical cWW pair | ||
| IL_5JUP_242 | Isolated non-canonical cWW pair | ||
| IL_5JUP_044 | Tandem non-canonical cWW pairs | ||
| IL_5JUP_045 | Tandem non-canonical cWW pairs | ||
| IL_5JUP_046 | Isolated non-canonical cWW pair | ||
| IL_5JUP_051 | Single bulged A | ||
| IL_5JUP_052 | Single bulged G | ||
| IL_5JUP_053 | C-loop | ||
| IL_5JUP_054 | Isolated non-canonical cWW pair | ||
| IL_5JUP_055 | Minor groove platform | ||
| IL_5JUP_056 | Isolated non-canonical cWW pair | ||
| IL_5JUP_057 | No text annotation | ||
| IL_5JUP_243 | No text annotation | ||
| IL_5JUP_058 | No text annotation | ||
| IL_5JUP_059 | No text annotation | ||
| IL_5JUP_060 | Single bulged U | ||
| IL_5JUP_061 | Isolated cWS basepair | ||
| IL_5JUP_066 | Isolated non-canonical cWW pair | ||
| IL_5JUP_261 | No text annotation | ||
| IL_5JUP_067 | No text annotation | ||
| IL_5JUP_068 | Isolated non-canonical cWW pair | ||
| IL_5JUP_245 | No text annotation | ||
| IL_5JUP_069 | Major groove platform; stack outside cWW | ||
| IL_5JUP_070 | No text annotation | ||
| IL_5JUP_071 | 180 degree turn | ||
| IL_5JUP_072 | Tandem non-canonical cWW pairs | ||
| IL_5JUP_247 | No text annotation | ||
| IL_5JUP_073 | No text annotation | ||
| IL_5JUP_074 | No text annotation | ||
| IL_5JUP_075 | No text annotation | ||
| IL_5JUP_076 | Isolated non-canonical cWW pair | ||
| IL_5JUP_085 | Triple sheared | ||
| IL_5JUP_248 | Tandem non-canonical cWW pairs | ||
| IL_5JUP_086 | No text annotation | ||
| IL_5JUP_088 | Tandem non-canonical cWW pairs | ||
| IL_5JUP_249 | Isolated non-canonical cWW pair | ||
| IL_5JUP_094 | Single stack bend | ||
| IL_5JUP_095 | No text annotation | ||
| IL_5JUP_096 | No text annotation | ||
| IL_5JUP_100 | No text annotation | ||
| IL_5JUP_102 | No text annotation | ||
| IL_5JUP_126 | No text annotation | ||
| IL_5JUP_128 | No text annotation | ||
| IL_5JUP_251 | No text annotation | ||
| IL_5JUP_138 | Kink-turn | ||
| IL_5JUP_139 | No text annotation | ||
| IL_5JUP_140 | Major groove platform with extra cWW | ||
| IL_5JUP_146 | No text annotation | ||
| IL_5JUP_148 | No text annotation | ||
| IL_5JUP_149 | No text annotation | ||
| IL_5JUP_150 | No text annotation | ||
| IL_5JUP_166 | No text annotation | ||
| IL_5JUP_256 | No text annotation | ||
| IL_5JUP_264 | No text annotation | ||
| IL_5JUP_167 | No text annotation | ||
| IL_5JUP_206 | Tandem non-canonical cWW pairs | ||
| IL_5JUP_258 | Isolated non-canonical cWW pair | ||
| IL_5JUP_207 | Isolated non-canonical cWW pair | ||
| IL_5JUP_212 | Isolated non-canonical cWW pair | ||
| IL_5JUP_220 | Double sheared; A in syn | ||
| IL_5JUP_221 | Multiple bulged bases | ||
| IL_5JUP_228 | Single stack bend | ||
| IL_5JUP_232 | No text annotation | ||
| IL_5JUP_233 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5JUP_001 | 1/A/41:42, 1/A/433:439, 1/A/464:466 | No text annotation | homologous J3_8P9A_068 J3_58657.1 | |
| J3_5JUP_003 | 1/A/633:635, 1/A/861:865, 1/A/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_5JUP_032 | 1/A/633:635, 1/A/861:866, 1/A/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_5JUP_033 | 1/A/760:763, 1/A/773:775, 1/A/785:790 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_5JUP_005 | 1/A/1037:1039, 1/A/1079:1083, 1/A/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_5JUP_008 | 1/A/1180:1187, 1/A/1198:1209, 1/A/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_5JUP_010 | 1/A/1283:1288, 1/A/1327:1332, 1/A/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_5JUP_011 | 1/A/1293:1294, 1/A/1303:1306, 1/A/1318:1322 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_5JUP_014 | 1/B/113:123, 1/B/149:158, 1/B/263:267 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_5JUP_035 | 1/B/113:124, 1/B/144:158, 1/B/263:267 | No text annotation | ||
| J3_5JUP_036 | 1/B/185:189, 1/B/205:214, 1/B/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_5JUP_037 | 1/B/340:356, 1/B/363:368, 1/C/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_5JUP_015 | 1/B/369:376, 1/B/403:404, 1/C/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_5JUP_038 | 1/B/369:379, 1/B/390:404, 1/C/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
| J3_5JUP_039 | 1/B/435:443, 1/B/491:495, 1/B/618:624 | No text annotation | ||
| J3_5JUP_016 | 1/B/502:503, 1/B/588:597, 1/B/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_5JUP_017 | 1/B/814:820, 1/B/905:907, 1/B/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_5JUP_018 | 1/B/828:831, 1/B/863:867, 1/B/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_5JUP_019 | 1/B/986:987, 1/B/1062:1066, 1/B/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_5JUP_020 | 1/B/1230:1232, 1/B/1256:1262, 1/B/1277:1279 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_5JUP_021 | 1/B/1479:1485, 1/B/1857:1859, 1/B/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_5JUP_022 | 1/B/1488:1491, 1/B/1837:1843, 1/B/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_5JUP_046 | 1/B/1526:1531, 1/B/1591:1595, 1/B/1612:1613 | No text annotation | homologous J3_8CRE_015 NA | |
| J3_5JUP_047 | 1/B/1537:1542, 1/B/1551:1561, 1/B/1578:1584 | No text annotation | ||
| J3_5JUP_023 | 1/B/1631:1632, 1/B/1641:1645, 1/B/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_5JUP_042 | 1/B/1654:1658, 1/B/1791:1792, 1/B/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_5JUP_024 | 1/B/2432:2435, 1/B/2512:2517, 1/B/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_5JUP_025 | 1/B/2529:2532, 1/B/2547:2563, 1/B/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_5JUP_043 | 1/B/2651:2653, 1/B/2754:2765, 1/B/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_5JUP_026 | 1/B/2664:2666, 1/B/2690:2692, 1/B/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_5JUP_027 | 1/B/2886:2889, 1/B/2914:2916, 1/B/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_5JUP_044 | 1/B/3171:3176, 1/B/3212:3220, 1/B/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_5JUP_028 | 1/B/3298:3300, 1/B/3314:3318, 1/B/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_5JUP_045 | 1/C/44:45, 1/C/58:64, 1/C/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_5JUP_029 | 1/D/9:14, 1/D/66:67, 1/D/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J4_5JUP_001 | 1/A/99:107, 1/A/307:309, 1/A/357:361, 1/A/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_5JUP_002 | 1/B/112:113, 1/B/267:272, 1/B/293:299, 1/B/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_5JUP_003 | 1/B/185:189, 1/B/205:208, 1/B/212:214, 1/B/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_5JUP_004 | 1/B/1451:1457, 1/B/1475:1477, 1/B/1876:1880, 1/B/2352:2353 | No text annotation | ||
| J4_5JUP_005 | 1/B/1492:1496, 1/B/1520:1525, 1/B/1614:1615, 1/B/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_5JUP_006 | 1/B/1674:1675, 1/B/1693:1694, 1/B/1752:1753, 1/B/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_5JUP_007 | 1/B/2130:2134, 1/B/2146:2150, 1/B/2186:2190, 1/B/2317:2322 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_5JUP_008 | 1/B/2192:2194, 1/B/2248:2249, 1/B/2267:2276, 1/B/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_5JUP_009 | 1/B/2654:2658, 1/B/2712:2716, 1/B/2740:2742, 1/B/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_5JUP_010 | 1/B/3010:3012, 1/B/3042:3043, 1/B/3098:3100, 1/B/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J5_5JUP_001 | 1/A/31:35, 1/A/473:479, 1/A/509:516, 1/A/536:546, 1/A/592:595 | No text annotation | ||
| J5_5JUP_002 | 1/A/54:57, 1/A/90:97, 1/A/386:388, 1/A/409:411, 1/A/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_5JUP_003 | 1/A/124:143, 1/A/172:182, 1/A/203:204, 1/A/263:265, 1/A/289:293 | No text annotation | ||
| J5_5JUP_004 | 1/A/124:143, 1/A/172:182, 1/A/203:204, 1/A/263:267, 1/A/288:293 | No text annotation | ||
| J5_5JUP_005 | 1/A/636:641, 1/A/693:698, 1/A/740:744, 1/A/807:817, 1/A/854:860 | No text annotation | ||
| J5_5JUP_006 | 1/B/20:22, 1/C/35:42, 1/C/102:107, 1/C/115:116, 1/C/137:139 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_5JUP_007 | 1/B/658:663, 1/B/799:802, 1/B/941:944, 1/B/1375:1376, 1/B/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_5JUP_008 | 1/B/675:678, 1/B/702:706, 1/B/713:721, 1/B/749:751, 1/B/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_5JUP_009 | 1/B/1906:1914, 1/B/1938:1939, 1/B/2109:2110, 1/B/2114:2122, 1/B/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_5JUP_012 | 1/B/2399:2406, 1/B/2815:2823, 1/B/2867:2875, 1/B/2952:2957, 1/B/2975:2980 | No text annotation | ||
| J5_5JUP_011 | 1/B/2416:2419, 1/B/2611:2614, 1/B/2627:2628, 1/B/2650:2651, 1/B/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_5JUP_001 | 1/B/22:27, 1/B/58:68, 1/B/75:79, 1/B/106:110, 1/B/321:331, 1/C/32:35 | No text annotation | ||
| J6_5JUP_002 | 1/B/2416:2419, 1/B/2611:2614, 1/B/2627:2628, 1/B/2650:2653, 1/B/2754:2765, 1/B/2793:2804 | No text annotation | ||
| J7_5JUP_001 | 1/B/949:954, 1/B/967:968, 1/B/1114:1117, 1/B/1141:1146, 1/B/1157:1161, 1/B/1338:1339, 1/B/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5JUP_031 | No text annotation | ||
| J3_5JUP_002 | No text annotation | ||
| J3_5JUP_004 | No text annotation | ||
| J3_5JUP_006 | No text annotation | ||
| J3_5JUP_007 | No text annotation | ||
| J3_5JUP_009 | No text annotation | ||
| J3_5JUP_012 | No text annotation | ||
| J3_5JUP_034 | No text annotation | ||
| J3_5JUP_013 | No text annotation | ||
| J3_5JUP_040 | No text annotation | ||
| J3_5JUP_041 | No text annotation | ||
| J3_5JUP_030 | No text annotation | ||
| J5_5JUP_010 | No text annotation |
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